simuPOP 1.1.0

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    Specification

  • Version: 1.1.0
  • File size: 10.4 KB
  • File name: Download
  • Last update:
  • Platform: Mac OS X 10.6 or later
  • License: GPL
  • Price:FREE
  • Company: Bo Peng (View more)

simuPOP 1.1.0 Download Publisher Review:




Whats new in version 1.1.0:


NEW FEATURES:
• Implement temporal estimates of effective population size for sampling plan 1. Add variables Ne_tempoFS_P1, Ne_tempoFS_P2, Ne_waples97_P1 and Ne_waples97_P2. Variables Ne_tempoFS and Ne_waples97 are now deprecated.
• A new file format to improve efficiency and reduce memory footprint of save/load of simuPOP populations.

BUGS:
• Fix setOption(version) for minor simuPOP releases with version string ending with a, b, etc.
• Fix lociPos for positions that are very close to each other.
• Fix a bug in mutator that crashes with low mutation rate.
• Fix a bug in recombinator that crashes with low recombination intensity.


Publisher review:
simuPOP evolves population(s) forward in time - subject to arbitrary number of genetic and environmental forces (recombination, migration, mutation, population size change etc.).

Easy simulations like most models in standard population genetics books can be setup easily, whereas very complicated simulations such as spreading of complex diseases, ancient out-of-africa migrations can be built step by step by adding appropriate operators (objects that work on populations).
Requirements:
  • Python


Operating system:
Mac OS X 10.6 or later

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Rating: 4.3 out of 5
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